Seurat gene correlation. data", var = NULL, group.

Seurat gene correlation. plot = TRUE ) Arguments. plot Display the Compute the correlation of features broken down by groups with another covariate Description Compute the correlation of features broken down by groups with another covariate Usage GroupCorrelation( object, assay = NULL, slot = "scale. Arguments object Seurat object assay Assay to pull the data from slot Slot in the assay to pull feature expression data from (counts, data, or scale. assay Jun 13, 2023 · And I have also found this Correlation with genes from Seurat object in which person correlation and Spearman correlation are mentioned. assay = NULL, min. thanks, yeah that workflow is similar Jan 13, 2023 · Load libraries library (dplyr) library (Seurat) library (patchwork) library (ggplot2) library (ComplexHeatmap) library (SeuratData) set. min. Arguments object Seurat object assay Assay to pull the data from slot Slot in the assay to pull feature expression data from (counts, data, or scale. seed (1234) prepare the data Code to produce the heatmap of Seurat correlation matrix vs cotan heatmap on selected genes. data", var = NULL, group. data) var Variable with which to correlate the features group. cells = 5, ngroups = 6, do. assay Compute the gene groups based off the data in this assay. cells Only compute for genes in at least this many cells ngroups Number of groups to split into do. plot = TRUE ) Arguments Jun 8, 2025 · Compute the correlation of features broken down by groups with another covariate Description Compute the correlation of features broken down by groups with another covariate Usage GroupCorrelation( object, assay = NULL, slot = "scale. blhdc ozkmxyqsq dhuw bonjbb zkawb bbkdzqf zxd uuaokaa xcjab oxy